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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24373902_24374482_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24373902 - 24374482
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGGGA
5'SS Class:
major
3'SS Sequence:
TTGTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
TGTCCCTGAAAT
Flanking Amino Acid:
FRSELIQYLKSDEVRSYISG
Intron Amino Acid Position:
1244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
57.7
41.7
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
85.8
0.81
0.8
80.8
36.4
Minor 5ss
29.9
-2.3
3.5
33.8
43
Minor BPS
65.3
0.56
1.6
81.38
39

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038480
24371956 - 24403839
31884
ENSAPLT00000019160
24371956 - 24403839
31884
ENSAPLT00000006397
24371956 - 24403839
31884