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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24374979_24375525_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24374979 - 24375525
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AACATCTTATCT
Flanking Amino Acid:
SYSELTAYLRNSEFSGLVGP
Intron Amino Acid Position:
1158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67.9
39.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
83
0.74
0.9
77.3
37
Minor 5ss
38.9
-1.2
3.1
47.7
42.3
Minor BPS
54.7
0.23
1.6
67.91
42.7

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038480
24371956 - 24403839
31884
ENSAPLT00000019160
24371956 - 24403839
31884
ENSAPLT00000006397
24371956 - 24403839
31884