About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24375616_24376103_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24375616 - 24376103
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTGTCTGATTT
Flanking Amino Acid:
LTRRFISYLSSSGMNIGLPG
Intron Amino Acid Position:
1128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
75.8
34
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
82.5
0.73
0.9
76.5
37.2
Minor 5ss
35.5
-1.6
3.7
50
41
Minor BPS
48.8
-0
1.8
67.65
44

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038480
24371956 - 24403839
31884
ENSAPLT00000019160
24371956 - 24403839
31884
ENSAPLT00000006397
24371956 - 24403839
31884