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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24376552_24376837_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24376552 - 24376837
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
TTTATTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACCTTTTTATTC
Flanking Amino Acid:
LAARVMSYMTSSSDRYQSYV
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.6
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.8
77
31.7
Minor 5ss
42.4
-0.8
2.8
53.9
36.9
Minor BPS
49.9
-0
1.5
54.99
38.5

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006397
24371956 - 24403839
31884
ENSAPLT00000038480
24371956 - 24403839
31884
ENSAPLT00000019160
24371956 - 24403839
31884