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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24376976_24377228_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24376976 - 24377228
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GCATCCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GTGAGCATATCT
Flanking Amino Acid:
IQQYVTDYLKSDNVRHYLTG
Intron Amino Acid Position:
1011

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
63.8
0.31
0.9
54.6
36.3
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
43.2
-0.4
2.2
62.5
46.8

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006397
24371956 - 24403839
31884
ENSAPLT00000038480
24371956 - 24403839
31884
ENSAPLT00000019160
24371956 - 24403839
31884