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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24378349_24378434_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24378349 - 24378434
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAC
U12 Branch Point Sequence:
CGCTCCTCCATT
Flanking Amino Acid:
QGEPGPRGFTGEPGEPGLPG
Intron Amino Acid Position:
924

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
65.9
0.4
1.1
57.5
39.1
Major PPT
69.7
0.44
1
63
38.6
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
48.4
-0
2
64.4
46.3

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019160
24371956 - 24403839
31884
ENSAPLT00000006397
24371956 - 24403839
31884
ENSAPLT00000038480
24371956 - 24403839
31884