About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24381132_24381833_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24381132 - 24381833
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCATTC
5'SS Class:
major
3'SS Sequence:
TTTCTTGAAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTTCTTGAAAA
Flanking Amino Acid:
VGPAGLPGQQGPRGEKGSPG
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
67.1
39.7
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
61.6
0.26
1.2
64.7
39.7
Minor 5ss
47
-0.3
3.1
68.2
42.8
Minor BPS
70.9
0.65
1.5
81.75
32.8

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038480
24371956 - 24403839
31884
ENSAPLT00000019160
24371956 - 24403839
31884
ENSAPLT00000006397
24371956 - 24403839
31884