Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24383058_24383627_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24383058 - 24383627

Intron Length:

570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTCAG

U12 Branch Point Sequence:

AAAAAAAGAAAT

Flanking Amino Acid:

PGNPGRPGTKGEPGAPGKVI

Intron Amino Acid Position:

764

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

83.9

30.3

Major BPS

59.4

0.23

1.5

69.4

37.7

Major PPT

87.8

0.85

0.6

88.4

21.1

Minor 5ss

44.3

-0.6

3.1

64.1

47.4

Minor BPS

35.4

-1

1.8

48.1

Associated Gene:

Gene:

COL17A1

Ensembl Gene ID:

ENSAPLG00000006175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038480

24371956 - 24403839

31884

ENSAPLT00000019160

24371956 - 24403839

31884

ENSAPLT00000006397

24371956 - 24403839

31884