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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24383664_24384343_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24383664 - 24384343
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTTTT
5'SS Class:
major
3'SS Sequence:
TCCCTTGTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACCTATTTAAAA
Flanking Amino Acid:
KGLTGPQGPPGLPGNPGRPG
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
34.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
73.5
0.53
0.9
72.9
36.1
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
53.2
0.1
1.6
59.59
40.3

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038480
24371956 - 24403839
31884
ENSAPLT00000019160
24371956 - 24403839
31884
ENSAPLT00000006397
24371956 - 24403839
31884