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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24384371_24385140_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24384371 - 24385140
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
ATATCTTAGAAT
Flanking Amino Acid:
AGRDGKPGQKGLTGPQGPPG
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
79.2
0.72
1
75
40
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
51.2
0.12
1.8
70.89
40.1

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006397
24371956 - 24403839
31884