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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24388196_24388368_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24388196 - 24388368
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTTTTCTAACA
Flanking Amino Acid:
EGPKGQKGSMGDPGMEGPMG
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
76.2
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79
0.65
0.8
74.4
30.8
Minor 5ss
43.5
-0.7
2.9
52.9
44.1
Minor BPS
58.5
0.26
1.7
68.01
38.6

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038480
24371956 - 24403839
31884
ENSAPLT00000019160
24371956 - 24403839
31884
ENSAPLT00000006397
24371956 - 24403839
31884