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Intron Name: Anas_platyrhynchos_platyrhynchos_6_24392556_24393841_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24392556 - 24393841

Intron Length:

1286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGTA

5'SS Class:

strong_major

3'SS Sequence:

ACCAATATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TGTCCTTTACCA

Flanking Amino Acid:

MASTGVSASAGGTVLSSQGD

Intron Amino Acid Position:

326

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.5

32.8

Major BPS

79.7

0.74

79.6

35.6

Major PPT

65.9

0.36

54.8

43.7

Minor 5ss

34.5

-1.8

3.4

46.2

49.1

Minor BPS

63.9

0.43

1.6

73.5

38.2

Associated Gene:

Gene:

COL17A1

Ensembl Gene ID:

ENSAPLG00000006175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019160

24371956 - 24403839

31884

ENSAPLT00000006397

24371956 - 24403839

31884