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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24393908_24394272_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24393908 - 24394272
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAAC
5'SS Class:
major
3'SS Sequence:
TTCTTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTCTTTCATT
Flanking Amino Acid:
LTQNASAASTAYGMKNTSQS
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
72.3
39.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.5
0.82
0.7
81.5
28.8
Minor 5ss
35.1
-1.7
2.8
43
44.2
Minor BPS
62.3
0.47
1.7
77.48
40

Associated Gene:

Gene:
COL17A1
Ensembl Gene ID:
ENSAPLG00000006175
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019160
24371956 - 24403839
31884
ENSAPLT00000006397
24371956 - 24403839
31884