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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24429718_24430791_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24429718 - 24430791
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TCATTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTCTTCATTT
Flanking Amino Acid:
APQRTGSGKQPMSATLRERL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.3
0.82
0.7
84.8
29.8
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
56.9
0.3
1.8
76.79
40.3

Associated Gene:

Gene:
SFR1
Ensembl Gene ID:
ENSAPLG00000016782
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020583
24429191 - 24431577
2387