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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24431173_24431385_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24431173 - 24431385
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCCCAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTCGCTGAAAT
Flanking Amino Acid:
LKLVKMYRSKNNLSELQALI
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.4
0.48
0.9
66.6
38.3
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
50.9
0.11
2
74.65
41.3

Associated Gene:

Gene:
SFR1
Ensembl Gene ID:
ENSAPLG00000016782
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020583
24429191 - 24431577
2387