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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24434054_24434877_R

Intron Information:

Intron Rank:
36
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24434054 - 24434877
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TGGAAATGGACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTGCTTTATTC
Flanking Amino Acid:
MKQTLDVMDKLHKKNTKNRQ
Intron Amino Acid Position:
1417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
49.6
-0
1.2
42.6
46.3
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
62.5
0.37
1.7
73.5
38.4

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006315
24432142 - 24475630
43489
ENSAPLT00000006223
24432142 - 24475630
43489