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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24439645_24440032_R

Intron Information:

Intron Rank:
31
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
24439645 - 24440032
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTATGCACACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
AAATAAGTAAAT
Flanking Amino Acid:
ELLQLYKCRPRTPVRKMLPY
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
54.8
0.11
1
46.1
41.2
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
41.8
-0.5
2.3
60.69
41.7

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006315
24432142 - 24475630
43489
ENSAPLT00000006223
24432142 - 24475630
43489