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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24447911_24448736_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24447911 - 24448736
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATCT
5'SS Class:
major
3'SS Sequence:
TTGTGATATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GCTTACAAAATT
Flanking Amino Acid:
LRKIEAADLKVQKKSLETVS
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.6
37
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.8
0.54
1
70.8
43.7
Minor 5ss
38.9
-1.3
3.4
57.4
46.7
Minor BPS
46.6
-0.1
2.1
66.51
44.1

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006315
24432142 - 24475630
43489
ENSAPLT00000006223
24432142 - 24475630
43489