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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24449670_24450083_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24449670 - 24450083
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGACAG
5'SS Class:
major
3'SS Sequence:
TGTACCTTGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTACCTTGAAA
Flanking Amino Acid:
QAEAEQEVAMVREKIEMETL
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
56.9
41.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
58.5
0.19
1.2
59.6
40.8
Minor 5ss
37.5
-1.4
3
44.3
44.5
Minor BPS
66.2
0.5
1.5
73.66
37.3

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006315
24432142 - 24475630
43489
ENSAPLT00000006223
24432142 - 24475630
43489