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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24454567_24454913_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24454567 - 24454913
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTGCTTTTAACA
Flanking Amino Acid:
FICKYNLSEQNILEDPPVLL
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
71.7
38.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.6
0.53
1
69.4
41.7
Minor 5ss
35.6
-1.6
2.8
46
42
Minor BPS
65
0.47
1.3
67.7
39.3

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006315
24432142 - 24475630
43489
ENSAPLT00000006223
24432142 - 24475630
43489