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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24462211_24462957_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24462211 - 24462957
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGCAT
5'SS Class:
major
3'SS Sequence:
CTTTTCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
CTTTTCTGCACA
Flanking Amino Acid:
CNEGLYTAGNEGILFFYHIR
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.6
39.7
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
79.8
0.67
0.9
75.7
32.9
Minor 5ss
34.8
-1.7
3.5
52
44.9
Minor BPS
55.6
0.17
1.9
71.44
41

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006223
24432142 - 24475630
43489