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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24463038_24465393_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24463038 - 24465393
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
CTTGTGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAAATTTGATA
Flanking Amino Acid:
YVRREVWKKKGGKPRDLQRT
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
0.9
72.9
37.4
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
53.2
0.09
1.5
64.47
35.6

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006315
24432142 - 24475630
43489
ENSAPLT00000006223
24432142 - 24475630
43489