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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24467416_24469960_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24467416 - 24469960
Intron Length:
2545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGCTACT
5'SS Class:
major
3'SS Sequence:
TTTTGTGCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GCTAATTTAACT
Flanking Amino Acid:
LVGDEAETFMPRNDIKPLVH
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
68
42.9
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
71.3
0.48
1.1
71.9
38.3
Minor 5ss
42.7
-0.8
3
57.7
41.8
Minor BPS
61.9
0.45
1.6
74.46
42.1

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006315
24432142 - 24475630
43489
ENSAPLT00000006223
24432142 - 24475630
43489