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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24470112_24471638_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24470112 - 24471638
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
TTTTCCTCAGAC
Flanking Amino Acid:
RNYDEHYLKQNPVKLPYGHG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
83.7
0.76
0.8
79.1
32.9
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
60
0.29
1.9
76.51
39.2

Associated Gene:

Gene:
CFAP43
Ensembl Gene ID:
ENSAPLG00000006084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006315
24432142 - 24475630
43489
ENSAPLT00000006223
24432142 - 24475630
43489