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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24529923_24534534_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24529923 - 24534534
Intron Length:
4612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAAGTTT
5'SS Class:
major
3'SS Sequence:
ATTTTGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCTGTAAGT
Flanking Amino Acid:
DRETISSMKAEIEKAWKMVD
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
73.2
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.2
0.61
0.9
69.9
40.9
Minor 5ss
42.5
-0.8
3.5
64.7
46.7
Minor BPS
57.1
0.3
2.3
81.74
40.3

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427