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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24534684_24535640_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24534684 - 24535640
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CACTGTTTGACT
Flanking Amino Acid:
ESGLSSGQEYNIRDLLKLKE
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
81.3
0.7
0.8
72.5
37.7
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
52.9
0.17
1.8
67.09
44.4

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427