About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24535798_24538046_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24535798 - 24538046
Intron Length:
2249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTACA
5'SS Class:
major
3'SS Sequence:
TCAATTGTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATCTTCTCAATT
Flanking Amino Acid:
KNEAEQAVMQLQQEIQMRQN
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.3
73.3
37.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
70.7
0.47
1
64.7
41.1
Minor 5ss
37.5
-1.4
2.4
44
43.2
Minor BPS
65.4
0.56
1.5
77.99
38.9

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427