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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24538242_24540881_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24538242 - 24540881
Intron Length:
2640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTTAATCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTTTCTTAATC
Flanking Amino Acid:
KMERHLKEQKILSEKAGKEL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.1
34.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.8
0.49
1
66
39.3
Minor 5ss
36.8
-1.5
3.3
49.4
47.1
Minor BPS
81.1
0.96
1
82.67
30.6

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427