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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24543387_24545661_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24543387 - 24545661
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GAATCCAGAATT
Flanking Amino Acid:
LKIEISGLEKELEAAKKQAE
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.1
0.75
0.7
76.9
31.9
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
52.6
0.16
1.7
69.54
40.5

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427