Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24547108_24550058_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24547108 - 24550058

Intron Length:

2951

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAACA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTGCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

AATGGCTTAATC

Flanking Amino Acid:

INEANELKQKVLQNLKDIEL

Intron Amino Acid Position:

456

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

74.4

Major BPS

80.4

0.76

80.3

31.8

Major PPT

81.4

0.71

0.8

73.2

37.3

Minor 5ss

32.4

-2

3.1

40.9

45.1

Minor BPS

56.8

0.19

1.9

65.64

40.3

Associated Gene:

Gene:

CFAP58

Ensembl Gene ID:

ENSAPLG00000005743

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005932

24527873 - 24585299

57427