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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24550221_24552706_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24550221 - 24552706
Intron Length:
2486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAGAG
5'SS Class:
major
3'SS Sequence:
TCTGTACTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTCTGTACTT
Flanking Amino Acid:
LYSKNLVEAKDEIAEMKKRL
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.3
40
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76
0.59
0.9
69.7
35.8
Minor 5ss
27.7
-2.6
3.6
37
47.6
Minor BPS
49.6
0.05
2.2
74.65
43.4

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427