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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24556950_24558955_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24556950 - 24558955
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
GKSVANVEELRQEVHHMRKE
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.2
35.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
76.1
0.59
1.1
80.4
36.2
Minor 5ss
30.7
-2.2
3.2
39.2
46.2
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427