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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24559068_24561415_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24559068 - 24561415
Intron Length:
2348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTCT
5'SS Class:
major
3'SS Sequence:
TGCTCTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TAATTTTTGATA
Flanking Amino Acid:
LNVHRWRKLEASDPSTYELI
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.1
34.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
70.3
0.46
0.9
62.7
38.8
Minor 5ss
34
-1.8
3.3
48.1
47.5
Minor BPS
63.1
0.4
1.1
66.67
33.5

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427