About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24561521_24578299_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24561521 - 24578299
Intron Length:
16779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCAA
5'SS Class:
major
3'SS Sequence:
GTCTGTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATACAACT
Flanking Amino Acid:
EVIEKELLLQEKEKLYVELK
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.8
41.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78
0.63
0.9
72.8
37.5
Minor 5ss
29.1
-2.4
3.4
38.6
46.4
Minor BPS
49.3
0.03
2
74.18
42.4

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427