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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24580139_24584243_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24580139 - 24584243
Intron Length:
4105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGGAG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGTAT
U12 Branch Point Sequence:
TTCTGTTTCAAG
Flanking Amino Acid:
LAQKRKEQQAKEKERSLAEM
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
59.4
39.6
Major BPS
54.9
0.12
1.4
55.4
41.7
Major PPT
76.7
0.6
1
75.1
38.8
Minor 5ss
36.4
-1.5
3.5
45.6
44.3
Minor BPS
45
-0.5
2.3
55.63
46

Associated Gene:

Gene:
CFAP58
Ensembl Gene ID:
ENSAPLG00000005743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005932
24527873 - 24585299
57427