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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24597153_24597875_F

Intron Information:

Intron Rank:
148373
Intron Class:
major
Intron Phase:
Intron Coordinates:
24597153 - 24597875
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTAATAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTACTGTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
80
0.75
1
78.6
31
Major PPT
63.9
0.31
1
60.4
44.6
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
55
0.15
2
69.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029893
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045544
24587646 - 24597976
10331