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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24598011_24599279_F

Intron Information:

Intron Rank:
140818
Intron Class:
major
Intron Phase:
Intron Coordinates:
24598011 - 24599279
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
57.1
47.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
31.3
-2.1
3.1
31.5
42.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025831
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038169
24597991 - 24606995
9005