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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24599472_24603084_F

Intron Information:

Intron Rank:
140820
Intron Class:
major
Intron Phase:
Intron Coordinates:
24599472 - 24603084
Intron Length:
3613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TAATACAGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
76.8
0.6
0.7
69.2
31.5
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
42.6
-0.4
2
61.56
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025831
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042260
24599304 - 24603173
3870