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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24877_25864_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24877 - 25864
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATTAACT
Flanking Amino Acid:
VVMDHILNLKIVHILNMTSA
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.5
32.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
85.4
0.8
0.8
79.7
31.7
Minor 5ss
34.5
-1.8
3.4
46.2
49.1
Minor BPS
68
0.64
1.8
86.54
38.8

Associated Gene:

Gene:
CHUK
Ensembl Gene ID:
ENSAPLG00000011503
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039931
12183 - 46227
34045
ENSAPLT00000037450
14485 - 44896
30412
ENSAPLT00000012207
12183 - 45972
33790