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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24918225_24922437_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24918225 - 24922437
Intron Length:
4213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
GCACTCATGACT
Flanking Amino Acid:
PCVCGQGDFECDYGYERHSN
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
74.6
0.55
0.8
69.6
36.2
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
48.8
-0
1.6
62.89
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017158
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033694
24917986 - 24930670
12685