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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24924216_24930475_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24924216 - 24930475
Intron Length:
6260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
AGTTTCCTAATC
Flanking Amino Acid:
NATFIILMEEGDLQRTNIQL
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.2
28.4
Major BPS
79
0.72
1
80.3
31.7
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
41.1
-1
2.7
51.5
45.7
Minor BPS
61
0.33
1.6
70.02
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017158
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033694
24917986 - 24930670
12685