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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24967494_24968762_F

Intron Information:

Intron Rank:
150634
Intron Class:
major
Intron Phase:
Intron Coordinates:
24967494 - 24968762
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCACTATT
5'SS Class:
major
3'SS Sequence:
CTTACTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCCTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.4
81.8
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.4
0.57
0.8
68.8
31.6
Minor 5ss
42.6
-0.8
2.7
60.7
43.6
Minor BPS
72.9
0.7
1.5
79.47
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030929
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023140
24967354 - 24976179
8826