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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24968856_24972524_F

Intron Information:

Intron Rank:
150635
Intron Class:
major
Intron Phase:
Intron Coordinates:
24968856 - 24972524
Intron Length:
3669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
GTTCCCCCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.2
0.45
0.9
67.7
33.7
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
66.7
0.52
1.6
74.5
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030929
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023140
24967354 - 24976179
8826