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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24968856_24974090_F

Intron Information:

Intron Rank:
150640
Intron Class:
major
Intron Phase:
Intron Coordinates:
24968856 - 24974090
Intron Length:
5235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
CCATCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTGCTTTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
81.4
0.71
0.8
76
32.2
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
50.8
0.02
1.5
62.51
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030929
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046889
24965718 - 24974305
8588