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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24974204_24975317_F

Intron Information:

Intron Rank:
150638
Intron Class:
major
Intron Phase:
Intron Coordinates:
24974204 - 24975317
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
GTCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCCTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82
0.72
0.9
73.7
40.6
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
68
0.42
1.8
73.58
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030929
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023140
24967354 - 24976179
8826