Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25146684_25146785_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

25146684 - 25146785

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTGGGAAAC

5'SS Class:

weak_major

3'SS Sequence:

GAAGGACTTATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTACCAC

U12 Branch Point Sequence:

AAGGACTTATAG

Flanking Amino Acid:

GDMPDSTGITAFSQGKWNFH

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.17

1.1

55.4

37.7

Major BPS

55.7

0.14

1.3

66.8

39.4

Major PPT

53.9

0.09

43.7

42.1

Minor 5ss

29.8

-2.3

3.2

43.7

43.9

Minor BPS

41.9

-0.7

1.9

41.3

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005363

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005533

25145955 - 25147868

1914