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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25146956_25147063_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25146956 - 25147063
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCCTGAAGT
5'SS Class:
weak_major
3'SS Sequence:
AAGTATGCCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTCCAA
U12 Branch Point Sequence:
GCTTCTTGTACT
Flanking Amino Acid:
PQSNPLPDVVDDTEVAHNNY
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.4
58.8
45.5
Major BPS
48.7
-0
1.2
58.4
37.9
Major PPT
59
0.2
1
50.5
42.8
Minor 5ss
26.9
-2.7
3.8
41.3
44.8
Minor BPS
55.5
0.25
1.8
73.41
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005363
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005533
25145955 - 25147868
1914