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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25147077_25147158_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25147077 - 25147158
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCTATGG
5'SS Class:
weak_major
3'SS Sequence:
CTTCCTGGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GCTTCCTGAAGG
Flanking Amino Acid:
AQSNPQSNPLPDVVDDTEVA
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.1
45.1
39.3
Major BPS
69.6
0.49
1
59.5
39
Major PPT
72.7
0.51
1
64.7
41.3
Minor 5ss
31
-2.2
3.2
35.9
42.8
Minor BPS
55.8
0.04
1.9
60.99
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005363
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005533
25145955 - 25147868
1914