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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25156946_25158423_F

Intron Information:

Intron Rank:
129747
Intron Class:
major
Intron Phase:
Intron Coordinates:
25156946 - 25158423
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAGG
5'SS Class:
major
3'SS Sequence:
CTCTTTCCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
CCCACTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.8
43.3
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
81.3
0.7
0.7
76.6
25.7
Minor 5ss
27.9
-2.5
2.8
32.4
41.9
Minor BPS
48.8
-0
1.7
60.64
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019826
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041555
25155984 - 25159466
3483