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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25198196_25199251_R

Intron Information:

Intron Rank:
133408
Intron Class:
major
Intron Phase:
Intron Coordinates:
25198196 - 25199251
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGACCC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
AAAGTATCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
56.1
41.5
Major BPS
64.7
0.37
1
73
31.5
Major PPT
83.7
0.76
0.8
77.2
37.1
Minor 5ss
34.7
-1.7
2.9
43.8
43.4
Minor BPS
39
-0.7
1.8
49.69
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019019
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017407
25196954 - 25199471
2518